Datasets used in plotly examples and documentation. For example, the git and github content of stat 545 eventually grew into its. Join jenny bryan and jim hester of rstudio for this twoday handson workshop designed for experienced r and rstudio users who want to redesign their r lifestyle. Packages that i specifically maintain or contribute heavily to. For each of 142 countries, the package provides values for life expectancy, gdp per capita, and population, every five years, from 1952 to 2007. Chapter 31 make a github repo browsable happy git and github. Github repositories created and contributed to by jennifer jenny bryan. If nothing happens, download github desktop and try again. She has since joined rstudio as a software engineer, on the tidyverse and rlib teams and is an adjunct professor at ubc. She also serves in the leadership of ropensci and forwards and is an. This will give you unlimited private repositories, among other goodies. If youd missed this sold out course at rstudioconf 2018 now is your chance. Great information on best practices for managing projects and r itself.
I highly recommend you install a precompiled binary distribution for your operating system use the links up at the top of the cran page linked above install rstudios ide stands for integrated development environment, a powerful user. Chapter 6 install git happy git and github for the user. The source for the materials of this course is on github at wesslenfall2017. Simply go to both links and download the latest versions of r and r studio locally.
If using windows, you also need to download rtools and activeperl. There are many good online guides to learn more about git and github and as with any open source software there is a huge community that can be a great resource. Jenny is known for smoothing the interfaces between r and spreadsheets, web apis, and gitgithub. We like this because git for windows leaves the git executable in a conventional.
Also delivered elsewhere, such as the first mexican statistical association school in data science by jenny bryan twitter. This fall 2018 thriv scholars biomedical data science training program is a sevenpart series of courses introducing the essentials of biomedical data science using r, directed toward junior faculty seeking a clinical and translational research career. Happy git and github for the user by jenny bryan goodreads. This is by no means a comprehensive list, but hopefully a launching pad for some very useful website and books. After publishing this post, jenny bryan kindly pointed out that there was another way to get authenticated, which was to use personal access token. Datacamp is another great place to start learning online. My class is an abbreviated ripoff of her class, so more explanations can be found on her page. Chapter 4 github introduction to open data science.
Everything i do is in git, everything is on github and at this point, almost everything. Jenny is a software engineer on the tidyverse team. R script to follow along save as to download part 2. Jenny is a software engineer on the tidyverse team and a recovering biostatistician who takes special delight in eliminating the small agonies of data analysis. Happy git and github for the user by jenny bryan and the stat 545 tas. In this occasional series, we interview someone using a loosely defined set of interview questions for the purpose of demystifying the creative and development processes of r community members.
Data analysis, statistical research, and teaching statistics have at least one thing in common. Shes been working in rs for over 20 years and is a member of the r foundation. Jenny bryan ggplot2 tutorial download ggplot2 documentation. A survey course in advanced topics in statistics and data analysis for environmental scientists ordinal and multinomial logistic regression, bootstrapping, nonlinear models, intro to timeseries analysis, spatial data analysis and interpolation, ordination methods, cluster analysis, text mining, etc. Packages are the fundamental units of reproducible r code. Jennifer jenny bryan is a data scientist and an associate professor of statistics at the. She is a recovering biostatistician who takes special delight in eliminating the small agonies of data analysis. University of georgia fashion merchandising student. Though rrstudio may seem intimidating, it is actually quite straight forward to set up and, after learning a few basics, you can start running analyses and writing your own in no time. Great resource that provides a number of interactive books and tutorials for doing reproducible research in r. If you have no idea what im talking about, think of your hosting service as dropbox but much, much better. Welcome to the casa0005 geographic information systems and science online pratical handbook.
Git allows groups of people to work on the same documents often code at the same time, and without stepping on each others toes. See youtube video for installing r, rstudio and rmarkdown at download r from download rstudio desktop. Benjamin soltoffs u of chicago computing for the social sciences course or jenny bryans u of british columbia stat 545 course. General resources cheat sheets various cheat sheets on a range of topics, from dplyr, ggplot, r markdown, and more. Given this is a bit more secure than using the basic authentication of using username and password, id recommend using personal access token option over basic authentication.
Course logistics, rrstudio, making r markdown documents. The main author, jenny bryan, developed this version of stat 545 as a professor at ubc. R markdown assignment template save as to download general r resources. Jennifer jenny bryan is a data scientist and an associate professor of statistics at the university of british columbia where she developed the master of data science program. We will learn about version control and practice a workflow with github and. Instructions for using rstudio in the csscr lab hopefully week 1 only weekly lecture notes and links.
I work on the team that maintains the packages in the tidyverse and rlib organizations. What they forgot to teach you about r by jenny bryan and jim hester. In the following, i refer to all of it as just github. Happy git provides opinionated instructions on how to. In this book youll learn how to turn your code into packages that others can easily download and use. Join facebook to connect with jenny bryan and others you may know. Most of my software work is done in the open, on github. There are data files, source code, figures, tables, prepared reports, and much more. Happy git and github for the user by jennifer bryan is licensed under a creative commons. Using git and github with r, rstudio, and r markdown. This is an introduction to using r for basic fisheries analysis.
The main author, jenny bryan, developed this version of stat. Install r, a free software environment for statistical computing and graphics from cran, the comprehensive r archive network. Teacups, giraffes, and statistics, an illustrated and interactive introduction to r and statistics. If yes, then the git you downloaded isnt installed, please redownload if. Yes, all those names are totally confusing, but you might encounter them elsewhere and i want you to be wellinformed. The mozilla science lab github for collaboration on open projects guide. Install git and get it working smoothly with github, in the shell and in the rstudio ide. As industry expert jenny bryan explains in her white paper.
Extract data from private github repository with rest api. The british ecological society guide to reproducible code. Github is in some sense the interface and git the underlying engine a bit like rstudio and r. Most of these files evolve over the course of a project and often need to be shared with others, for reading or edits, as a project unfolds. Phillip guos basic git and github tutorials three tutorials about 10 minutes each clone a github repo with rstudio.
Some of the course material and content layout here is modified in part from jenny bryans stat 545 course, software carpentry, data carpentry, david robinsons blog, marian schmidts msu ngs workshop, and likely many others. I studied classics at fitzwilliam college, cambridge and remained in cambridge for my postgraduate study, which focussed on plato and early greek philosophy. It is also notable for its focus on teaching using modern r packages, git and github, its extensive. Desktop app and the command line here is jenny bryans list of git clients. This class introduces methods, tools, and software for reproducibly managing, manipulating, analyzing, and visualizing largescale. Excuse me, do you have a moment to talk about version control. This website covers a broad range of topics on data cleaning, visualization, reproducible workflows, and more. They include reusable r functions, the documentation that describes how to use them, and sample data. Using git and github with r, rstudio, and r markdown 375 commits 1 branch. R script to follow along save as to download postworkshop assignments. For more information, jenny bryans happy git and github for the user is a free online. Since we will only be using git through github, i tend to not distinguish between the two.